STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0472KEGG: sse:Ssed_4144 hypothetical protein. (235 aa)    
Predicted Functional Partners:
Swoo_0471
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4145 diguanylate cyclase/phosphodiesterase.
 
 
 0.976
Swoo_0474
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_4142 type I secretion outer membrane protein, TolC family.
 
   
 0.960
Swoo_0476
Type I secretion system ATPase; KEGG: sse:Ssed_4140 ABC transporter-related protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
  
 0.948
Swoo_0475
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_4141 type I secretion membrane fusion protein, HlyD family.
 
  
 0.941
Swoo_0473
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_4143 OmpA/MotB domain protein.
     
 0.848
Swoo_0478
Outer membrane adhesin like proteiin; KEGG: sdn:Sden_0384 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; SMART: Cadherin.
 
   
 0.648
Swoo_0477
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; transferase hexapeptide repeat containing protein; Two component regulator propeller; KEGG: saz:Sama_3258 putative outer membrane adhesin like protein.
 
   
 0.589
Swoo_2945
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sfr:Sfri_1418 diguanylate cyclase/phosphodiesterase.
   
 
 0.585
Swoo_4345
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_0555 diguanylate cyclase/phosphodiesterase.
 
 
 
 0.561
Swoo_2555
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_2045 diguanylate cyclase/phosphodiesterase.
 
 
 0.489
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.