Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0477TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; transferase hexapeptide repeat containing protein; Two component regulator propeller; KEGG: saz:Sama_3258 putative outer membrane adhesin like protein. (16322 aa)    
Predicted Functional Partners:
Swoo_0476
Type I secretion system ATPase; KEGG: sse:Ssed_4140 ABC transporter-related protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
  
 0.773
Swoo_0475
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_4141 type I secretion membrane fusion protein, HlyD family.
 
  
 0.765
Swoo_0474
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_4142 type I secretion outer membrane protein, TolC family.
 
    0.737
Swoo_0472
KEGG: sse:Ssed_4144 hypothetical protein.
 
   
 0.594
Swoo_3174
SMART: Dystroglycan-type cadherin domain protein; KEGG: sdn:Sden_3728 cadherin.
  
     0.509
Swoo_0478
Outer membrane adhesin like proteiin; KEGG: sdn:Sden_0384 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; SMART: Cadherin.
 
    
0.504
Swoo_0647
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; Proprotein convertase P; KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
 
 
 0.502
Swoo_0473
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_4143 OmpA/MotB domain protein.
   
   0.469
Swoo_3041
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sse:Ssed_1611 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
 
 0.454
Swoo_0471
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4145 diguanylate cyclase/phosphodiesterase.
     
 0.443
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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