STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0493PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: sfr:Sfri_0451 Kelch repeat protein. (376 aa)    
Predicted Functional Partners:
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.637
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
  
     0.611
Swoo_0626
KEGG: dps:DP1297 hypothetical protein.
  
     0.592
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.570
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.568
Swoo_0790
KEGG: sse:Ssed_3793 hypothetical protein.
  
     0.527
Swoo_0492
Protein of unknown function DUF542 ScdA domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
       0.520
Swoo_1434
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_3503 TonB-dependent receptor.
  
     0.510
Swoo_3672
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sse:Ssed_3448 hypothetical protein.
  
     0.507
Swoo_3641
PFAM: Uncharacterized lipoprotein; KEGG: sse:Ssed_3439 uncharacterized lipoprotein.
  
     0.485
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.