STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0495PFAM: HipA domain protein; KEGG: spe:Spro_4311 HipA domain protein. (411 aa)    
Predicted Functional Partners:
Swoo_0494
KEGG: spe:Spro_4310 helix-turn-helix domain protein.
 
 
 0.957
Swoo_0496
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: spl:Spea_3847 helix-turn-helix domain protein.
 
 
 0.661
Swoo_0497
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: spl:Spea_3846 HipA domain protein.
 
   
0.563
Swoo_0493
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: sfr:Sfri_0451 Kelch repeat protein.
       0.480
Swoo_4571
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sse:Ssed_0375 HipA domain protein.
 
   
 0.474
Swoo_4320
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_0632 DNA-binding protein.
   
 
 0.422
Swoo_4570
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_0376 transcriptional regulator, XRE family.
  
 
 0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.