STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0502PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: sbm:Shew185_1977 N-6 DNA methylase. (493 aa)    
Predicted Functional Partners:
Swoo_0501
PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit.
 
 
 0.999
Swoo_0503
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: sdn:Sden_1234 type III restriction enzyme, res subunit.
 
 
 0.982
Swoo_0500
KEGG: sec:SC170 hypothetical protein.
     
 0.802
Swoo_0499
KEGG: sec:SC171 hypothetical protein.
       0.779
Swoo_0597
KEGG: shw:Sputw3181_0736 hypothetical protein.
  
  
 0.697
Swoo_0454
AAA ATPase; KEGG: fjo:Fjoh_4877 AAA ATPase.
  
  
 0.507
Swoo_3060
PFAM: SMC domain protein; KEGG: sse:Ssed_1589 exonuclease SbcC, putative.
 
   
 0.504
Swoo_0706
PFAM: protein of unknown function DUF262; KEGG: pth:PTH_0153 hypothetical protein.
 
   
 0.485
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.485
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
      
 0.457
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.