STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0502PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: sbm:Shew185_1977 N-6 DNA methylase. (493 aa)    
Predicted Functional Partners:
Swoo_0501
PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit.
 
 
 0.999
Swoo_0503
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: sdn:Sden_1234 type III restriction enzyme, res subunit.
 
 
 0.992
Swoo_0500
KEGG: sec:SC170 hypothetical protein.
     
 0.809
Swoo_0499
KEGG: sec:SC171 hypothetical protein.
       0.778
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.681
Swoo_0597
KEGG: shw:Sputw3181_0736 hypothetical protein.
  
  
 0.533
Swoo_0706
PFAM: protein of unknown function DUF262; KEGG: pth:PTH_0153 hypothetical protein.
 
   
 0.473
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.471
Swoo_0305
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase.
 
   
 0.450
Swoo_0069
PFAM: acyltransferase 3; KEGG: psp:PSPPH_5170 acyltransferase family protein.
   
    0.442
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.