Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0519TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: sse:Ssed_4104 diguanylate cyclase. (631 aa)    
Predicted Functional Partners:
Swoo_0520
PFAM: TatD-related deoxyribonuclease; KEGG: sse:Ssed_4103 TatD-related deoxyribonuclease.
       0.789
Swoo_0521
KEGG: sse:Ssed_4102 hypothetical protein.
       0.780
Swoo_0618
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.775
Swoo_2349
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: vvy:VVA0712 hypothetical protein.
  
    0.767
Swoo_0821
PFAM: EAL domain protein; KEGG: shm:Shewmr7_0931 EAL domain protein.
 
   
 0.764
Swoo_2622
PFAM: EAL domain protein; KEGG: sse:Ssed_1968 diguanylate phosphodiesterase.
  
    0.752
Swoo_1051
Diguanylate phosphodiesterase; PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: slo:Shew_0919 diguanylate phosphodiesterase.
  
    0.746
Swoo_4422
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_0539 diguanylate cyclase/phosphodiesterase.
  
    0.738
Swoo_4345
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_0555 diguanylate cyclase/phosphodiesterase.
 
    0.651
Swoo_0518
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: sse:Ssed_4105 porphobilinogen synthase; Belongs to the ALAD family.
       0.634
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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