STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0533KEGG: spc:Sputcn32_0511 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Swoo_0532
PFAM: phosphoesterase PA-phosphatase related; KEGG: sbn:Sbal195_0435 phosphoesterase PA-phosphatase related.
 
     0.873
Swoo_1423
KEGG: sse:Ssed_3202 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase.
  
  
 0.547
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
   
  
 0.511
Swoo_2348
Hypothetical protein; KEGG: cvi:CV_2935 probable chitinase A.
   
  
 0.487
Swoo_4620
KEGG: spl:Spea_3911 conserved hypothetical protein.
  
     0.482
Swoo_0531
KEGG: sse:Ssed_4093 hypothetical protein.
       0.467
Swoo_1101
Chitinase; PFAM: glycoside hydrolase family 19; Carbohydrate-binding family V/XII; KEGG: aha:AHA_0979 basic endochitinase.
   
  
 0.404
Swoo_1675
KEGG: sfu:Sfum_1625 hypothetical protein.
   
  
 0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.