Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0540KEGG: noc:Noc_0114 di-haem cytochrome c peroxidase. (499 aa)    
Predicted Functional Partners:
Swoo_0539
Putative metal dependent phosphohydrolase; PFAM: histidine kinase HAMP region domain protein; SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_0651 metal dependent phosphohydrolase.
       0.584
Swoo_0006
KEGG: sdn:Sden_0006 hypothetical protein.
 
     0.454
Swoo_3207
PFAM: OmpW family protein; KEGG: spc:Sputcn32_1392 OmpW family protein.
   
    0.441
Swoo_0541
KEGG: sse:Ssed_0660 hypothetical protein.
       0.426
Swoo_0542
KEGG: sse:Ssed_0661 hypothetical protein.
       0.426
Swoo_1282
Phosphoketolase; PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: sse:Ssed_1186 phosphoketolase.
   
    0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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