Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0553KEGG: sse:Ssed_4084 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Swoo_0246
PFAM: protein of unknown function DUF1332; KEGG: sse:Ssed_0247 protein of unknown function DUF1332.
   
    0.655
Swoo_4503
PFAM: Endoribonuclease L-PSP; KEGG: sse:Ssed_0466 endoribonuclease, L-PSP family.
      
 0.582
Swoo_0552
KEGG: sse:Ssed_4085 hypothetical protein.
       0.463
Swoo_0554
KEGG: sse:Ssed_4083 outer membrane efflux family protein, putative.
       0.455
Swoo_0555
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_4082 efflux transporter, RND family, MFP subunit.
       0.431
Swoo_4118
KEGG: sse:Ssed_3965 hypothetical protein.
   
    0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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