Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0570KEGG: sse:Ssed_4075 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Swoo_0408
PFAM: phospholipid/glycerol acyltransferase; KEGG: sse:Ssed_4174 phospholipid/glycerol acyltransferase.
 
     0.569
Swoo_0409
PFAM: phospholipid/glycerol acyltransferase; KEGG: sse:Ssed_4173 phospholipid/glycerol acyltransferase.
 
     0.565
Swoo_0569
PFAM: conserved hypothetical protein; KEGG: slo:Shew_3353 conserved hypothetical protein 22.
       0.536
Swoo_0571
KEGG: sse:Ssed_4074 ATP-dependent protease La (LON) domain protein, putative.
       0.434
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.422
Swoo_2858
PFAM: regulatory protein TetR; KEGG: sse:Ssed_1720 putative transcriptional regulator, TetR family.
  
     0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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