STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0571KEGG: sse:Ssed_4074 ATP-dependent protease La (LON) domain protein, putative. (191 aa)    
Predicted Functional Partners:
Swoo_2414
KEGG: sse:Ssed_2222 hypothetical protein.
  
     0.655
Swoo_4724
PFAM: type II secretion system protein N; KEGG: sse:Ssed_4348 type II secretion system protein N.
  
     0.649
Swoo_1710
KEGG: sse:Ssed_2935 hypothetical protein.
  
     0.642
Swoo_4346
KEGG: sse:Ssed_0607 hypothetical protein.
  
     0.626
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
  
     0.624
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.624
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.623
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.621
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.619
Swoo_4726
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.604
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.