Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0576PFAM: globin; KEGG: mca:MCA2507 cyanobacterial globin family protein. (121 aa)    
Predicted Functional Partners:
Swoo_0575
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mca:MCA2508 oxygenase, putative.
 
     0.909
Swoo_2756
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sse:Ssed_1832 oxidoreductase FAD-binding domain protein.
 
     0.612
Swoo_0574
KEGG: sse:Ssed_4072 hypothetical protein.
       0.513
Swoo_3958
KEGG: she:Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
      0.502
Swoo_0577
TIGRFAM: outer membrane adhesin like proteiin; KEGG: prw:PsycPRwf_1167 putative outer membrane adhesin like proteiin.
       0.483
Swoo_2842
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_1742 DsbA oxidoreductase.
  
  
 0.441
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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