Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0579KEGG: ppr:PBPRB1968 hypothetical protein. (804 aa)    
Predicted Functional Partners:
Swoo_1595
PFAM: response regulator receiver; CheW domain protein; KEGG: slo:Shew_1343 response regulator receiver modulated CheW protein.
  
 
 0.608
Swoo_1747
PFAM: response regulator receiver; CheW domain protein; KEGG: sse:Ssed_2899 response regulator receiver modulated CheW protein.
  
 
 0.608
Swoo_1944
PFAM: response regulator receiver; CheW domain protein; KEGG: sse:Ssed_2678 response regulator receiver modulated CheW protein.
  
 
 0.608
Swoo_0580
KEGG: vfi:VF0365 hypothetical protein.
       0.581
Swoo_0581
Hypothetical protein.
       0.581
Swoo_4442
PFAM: response regulator receiver; CheW domain protein; KEGG: sbn:Sbal195_3332 response regulator receiver modulated CheW protein.
  
 
 0.519
Swoo_2364
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: Hpt domain protein; KEGG: sse:Ssed_2257 metal dependent phosphohydrolase.
  
 
 0.471
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.411
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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