Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0582KEGG: vha:VIBHAR_04990 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Swoo_0580
KEGG: vfi:VF0365 hypothetical protein.
 
     0.562
Swoo_1509
KEGG: sse:Ssed_1368 conserved hypothetical cytosolic protein.
  
     0.544
Swoo_0581
Hypothetical protein.
       0.506
Swoo_4433
KEGG: sfr:Sfri_3594 hypothetical protein.
  
     0.487
Swoo_0288
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sfr:Sfri_0484 periplasmic sensor signal transduction histidine kinase.
 
 
   0.482
Swoo_0775
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_3808 hypothetical protein.
  
     0.481
Swoo_2899
KEGG: sse:Ssed_1695 hypothetical protein.
  
     0.471
Swoo_3757
SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3583 extracellular solute-binding protein, family 3; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
     0.435
Swoo_2882
KEGG: sse:Ssed_1709 hypothetical protein.
  
     0.428
Swoo_0647
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; Proprotein convertase P; KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
 
 0.415
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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