STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0585PFAM: IucA/IucC family protein; KEGG: vfi:VFA0161 aerobactin siderophore biosynthesis protein IucA. (925 aa)    
Predicted Functional Partners:
Swoo_0586
KEGG: vfi:VFA0164 L-lysine 6-monooxygenase.
  
 0.981
Swoo_0587
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1820 TonB-dependent receptor.
 
  
 0.866
Swoo_0584
PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_0923 major facilitator superfamily MFS_1.
     
 0.580
Swoo_0588
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
       0.550
Swoo_0583
Hypothetical protein; KEGG: shw:Sputw3181_3656 DedA family protein.
       0.543
Swoo_2658
PFAM: IucA/IucC family protein; KEGG: spe:Spro_0920 IucA/IucC family protein.
 
   
0.498
Swoo_0589
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_4070 integral membrane sensor signal transduction histidine kinase.
       0.463
Swoo_0590
PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: spl:Spea_0553 two component transcriptional regulator, fis family.
       0.463
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.