Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0586KEGG: vfi:VFA0164 L-lysine 6-monooxygenase. (444 aa)    
Predicted Functional Partners:
Swoo_0585
PFAM: IucA/IucC family protein; KEGG: vfi:VFA0161 aerobactin siderophore biosynthesis protein IucA.
 
  
 0.989
Swoo_2658
PFAM: IucA/IucC family protein; KEGG: spe:Spro_0920 IucA/IucC family protein.
 
  
 0.971
Swoo_0587
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: noc:Noc_1820 TonB-dependent receptor.
 
   
 0.923
Swoo_1423
KEGG: sse:Ssed_3202 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase.
  
 
 0.618
Swoo_0584
PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_0923 major facilitator superfamily MFS_1.
     
 0.592
Swoo_0588
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
       0.550
Swoo_0583
Hypothetical protein; KEGG: shw:Sputw3181_3656 DedA family protein.
       0.543
Swoo_3862
KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.531
Swoo_0946
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2875 outer membrane protein.
  
  
 0.501
Swoo_0589
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_4070 integral membrane sensor signal transduction histidine kinase.
       0.463
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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