STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0605PFAM: type II and III secretion system protein; transport-associated; KEGG: ppr:PBPRA2496 hypothetical Flp pilus assembly protein; Belongs to the bacterial secretin family. (446 aa)    
Predicted Functional Partners:
Swoo_0608
PFAM: type II secretion system protein E; KEGG: ppr:PBPRA2499 putative Flp pilus assembly protein.
  
 0.972
Swoo_0609
PFAM: type II secretion system protein; KEGG: ppr:PBPRA2500 hypothetical Flp pilus assembly protein TadB.
 
  
 0.962
Swoo_0610
PFAM: type II secretion system protein; KEGG: ppr:PBPRA2501 hypothetical Flp pilus assembly protein TadC.
 
  
 0.934
Swoo_0604
KEGG: ppr:PBPRA2495 hypothetical protein.
  
  
 0.914
Swoo_0607
KEGG: ppr:PBPRA2498 hypothetical protein.
 
     0.901
Swoo_0750
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: slo:Shew_0646 SAF domain protein.
 
  
 0.896
Swoo_0748
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: slo:Shew_0644 FHA domain containing protein.
  
 0.879
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
 
  
 0.829
Swoo_0603
PFAM: peptidase A24A prepilin type IV; KEGG: ppr:PBPRA2494 hypothetical membrane protein.
  
  
 0.827
Swoo_0746
PFAM: type II secretion system protein; KEGG: slo:Shew_0642 type II secretion system protein.
 
  
 0.813
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.