Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0607KEGG: ppr:PBPRA2498 hypothetical protein. (411 aa)    
Predicted Functional Partners:
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
 
     0.916
Swoo_0609
PFAM: type II secretion system protein; KEGG: ppr:PBPRA2500 hypothetical Flp pilus assembly protein TadB.
 
   
 0.908
Swoo_0605
PFAM: type II and III secretion system protein; transport-associated; KEGG: ppr:PBPRA2496 hypothetical Flp pilus assembly protein; Belongs to the bacterial secretin family.
 
     0.902
Swoo_1633
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: sse:Ssed_3051 GTP-binding signal recognition particle SRP54, G-domain.
  
 
 0.899
Swoo_0611
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRA2502 hypothetical protein.
 
     0.887
Swoo_0608
PFAM: type II secretion system protein E; KEGG: ppr:PBPRA2499 putative Flp pilus assembly protein.
 
  
 0.878
Swoo_0604
KEGG: ppr:PBPRA2495 hypothetical protein.
       0.824
Swoo_0606
KEGG: ppr:PBPRA2497 hypothetical protein.
       0.824
Swoo_0610
PFAM: type II secretion system protein; KEGG: ppr:PBPRA2501 hypothetical Flp pilus assembly protein TadC.
 
  
 0.803
Swoo_0603
PFAM: peptidase A24A prepilin type IV; KEGG: ppr:PBPRA2494 hypothetical membrane protein.
  
    0.792
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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