STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0610PFAM: type II secretion system protein; KEGG: ppr:PBPRA2501 hypothetical Flp pilus assembly protein TadC. (281 aa)    
Predicted Functional Partners:
Swoo_0609
PFAM: type II secretion system protein; KEGG: ppr:PBPRA2500 hypothetical Flp pilus assembly protein TadB.
 
  
 0.965
Swoo_0608
PFAM: type II secretion system protein E; KEGG: ppr:PBPRA2499 putative Flp pilus assembly protein.
 
  
 0.952
Swoo_0605
PFAM: type II and III secretion system protein; transport-associated; KEGG: ppr:PBPRA2496 hypothetical Flp pilus assembly protein; Belongs to the bacterial secretin family.
 
  
 0.934
Swoo_0747
PFAM: type II secretion system protein; KEGG: slo:Shew_0643 type II secretion system protein.
 
  
 0.928
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
 
    0.926
Swoo_0750
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: slo:Shew_0646 SAF domain protein.
 
  
 0.920
Swoo_0748
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: slo:Shew_0644 FHA domain containing protein.
 
  
 0.910
Swoo_0611
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRA2502 hypothetical protein.
 
  
 0.880
Swoo_0612
PFAM: TadE family protein; KEGG: vha:VIBHAR_06189 hypothetical protein.
  
    0.866
Swoo_0749
PFAM: type II and III secretion system protein; KEGG: slo:Shew_0645 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.841
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.