Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0626KEGG: dps:DP1297 hypothetical protein. (207 aa)    
Predicted Functional Partners:
Swoo_0625
KEGG: slo:Shew_0526 hypothetical protein.
       0.773
Swoo_0627
KEGG: sse:Ssed_4037 hypothetical protein.
       0.762
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.626
Swoo_0493
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: sfr:Sfri_0451 Kelch repeat protein.
  
     0.592
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.573
Swoo_0566
PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V.
 
   0.543
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
     0.507
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.503
Swoo_0624
KEGG: sse:Ssed_4039 methylenetetrahydrofolate reductase (NAD(P)H); TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.498
Swoo_1063
PFAM: KAP P-loop domain protein; KEGG: pha:PSHAa0207 hypothetical protein.
  
     0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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