STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0637PFAM: peptidase M28; KEGG: sse:Ssed_4028 peptidase M28. (352 aa)    
Predicted Functional Partners:
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.697
Swoo_3239
KEGG: sse:Ssed_1442 hypothetical protein.
  
     0.505
Swoo_4831
KEGG: sse:Ssed_4439 hypothetical protein.
  
     0.490
Swoo_0639
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_4026 major facilitator superfamily MFS_1.
       0.437
Swoo_3238
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sse:Ssed_1443 amidohydrolase.
  
     0.437
deaD
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
       0.427
Swoo_4208
KEGG: sse:Ssed_0761 hypothetical protein.
 
  
 0.416
Swoo_4754
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_4365 conserved hypothetical carboxypeptidase.
  
   
 0.411
Swoo_3465
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_3317 peptidase S9, prolyl oligopeptidase active site domain protein.
 
    0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.