Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0641KEGG: shm:Shewmr7_3154 curli production assembly/transport component CsgE, putative. (131 aa)    
Predicted Functional Partners:
Swoo_0642
KEGG: shn:Shewana3_3254 curli production assembly/transport component CsgF, putative.
  
  
 0.984
Swoo_0643
PFAM: Curli production assembly/transport component CsgG; KEGG: sdn:Sden_0971 curli production assembly/transport component CsgG.
  
 
 0.981
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
  
 
 0.854
Swoo_3849
KEGG: pvi:Cvib_0160 periplasmic protein.
  
 
 0.854
Swoo_0645
PFAM: Curlin associated repeat protein; KEGG: sbn:Sbal195_0876 curlin associated repeat protein.
     
 0.666
Swoo_0646
PFAM: Curlin associated repeat protein; KEGG: sbl:Sbal_3498 curlin associated repeat protein.
     
 0.440
Swoo_0640
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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