STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0645PFAM: Curlin associated repeat protein; KEGG: sbn:Sbal195_0876 curlin associated repeat protein. (503 aa)    
Predicted Functional Partners:
Swoo_0646
PFAM: Curlin associated repeat protein; KEGG: sbl:Sbal_3498 curlin associated repeat protein.
 
  
 0.956
Swoo_0643
PFAM: Curli production assembly/transport component CsgG; KEGG: sdn:Sden_0971 curli production assembly/transport component CsgG.
 
  
 0.927
Swoo_0642
KEGG: shn:Shewana3_3254 curli production assembly/transport component CsgF, putative.
 
   
 0.926
Swoo_0117
PFAM: MORN variant repeat protein; KEGG: slo:Shew_2461 MORN variant repeat protein.
  
     0.671
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.671
Swoo_0641
KEGG: shm:Shewmr7_3154 curli production assembly/transport component CsgE, putative.
     
 0.666
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
    0.661
Swoo_0647
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; Proprotein convertase P; KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
 
    0.659
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.656
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.639
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.