STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0646PFAM: Curlin associated repeat protein; KEGG: sbl:Sbal_3498 curlin associated repeat protein. (143 aa)    
Predicted Functional Partners:
Swoo_0645
PFAM: Curlin associated repeat protein; KEGG: sbn:Sbal195_0876 curlin associated repeat protein.
 
  
 0.955
Swoo_0642
KEGG: shn:Shewana3_3254 curli production assembly/transport component CsgF, putative.
 
   
 0.867
Swoo_0643
PFAM: Curli production assembly/transport component CsgG; KEGG: sdn:Sden_0971 curli production assembly/transport component CsgG.
 
  
 0.859
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.533
Swoo_2382
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sse:Ssed_2244 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.462
Swoo_0117
PFAM: MORN variant repeat protein; KEGG: slo:Shew_2461 MORN variant repeat protein.
  
     0.458
Swoo_3073
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_1577 diguanylate cyclase.
  
     0.447
Swoo_0641
KEGG: shm:Shewmr7_3154 curli production assembly/transport component CsgE, putative.
     
 0.444
Swoo_4107
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3954 protein of unknown function DUF214.
  
     0.413
Swoo_0671
KEGG: sse:Ssed_3864 hypothetical protein.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.