STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0648Microbial collagenase; PFAM: peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: son:SO_0639 collagenase family. (1005 aa)    
Predicted Functional Partners:
Swoo_3879
PFAM: chitin-binding domain 3 protein; KEGG: son:SO_1072 chitin-binding protein, putative.
  
   
 0.702
Swoo_3041
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sse:Ssed_1611 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
  
 0.659
Swoo_4827
TIGRFAM: M6 family metalloprotease domain protein; PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: sse:Ssed_4432 peptidase M6, immune inhibitor A.
  
  
 0.650
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.633
Swoo_2460
KEGG: sdn:Sden_0953 hypothetical protein.
  
     0.623
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.591
Swoo_2107
KEGG: sse:Ssed_2526 hypothetical protein.
  
     0.583
Swoo_0554
KEGG: sse:Ssed_4083 outer membrane efflux family protein, putative.
  
 
   0.580
Swoo_0557
Peptidase M4 thermolysin; PFAM: PKD domain containing protein; peptidase M4 thermolysin; Propeptide PepSY amd peptidase M4; peptidase domain protein; Peptidase M4 thermolysin; KEGG: sdn:Sden_3015 peptidase M4, thermolysin.
  
  
 0.576
Swoo_3639
KEGG: sse:Ssed_3438 hypothetical protein.
 
    0.574
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.