STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0664KEGG: sse:Ssed_3871 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Swoo_0663
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_3872 Sel1 domain protein repeat-containing protein.
       0.440
Swoo_0665
PFAM: outer membrane efflux protein; KEGG: sse:Ssed_3870 Co/Zn/Cd efflux system component.
       0.435
Swoo_0666
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sse:Ssed_3869 cobalt-zinc-cadmium resistance protein (cation efflux system protein).
       0.435
Swoo_0667
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sse:Ssed_3868 cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.422
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.