Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0666PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sse:Ssed_3869 cobalt-zinc-cadmium resistance protein (cation efflux system protein). (441 aa)    
Predicted Functional Partners:
Swoo_0665
PFAM: outer membrane efflux protein; KEGG: sse:Ssed_3870 Co/Zn/Cd efflux system component.
 
 
 0.972
Swoo_0667
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sse:Ssed_3868 cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.960
Swoo_0189
TIGRFAM: heavy metal efflux pump, CzcA family; KEGG: sse:Ssed_0210 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.776
Swoo_0556
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sse:Ssed_4081 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.746
Swoo_0555
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_4082 efflux transporter, RND family, MFP subunit.
  
     0.601
Swoo_0190
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_0211 membrane-fusion protein-like protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.560
Swoo_4195
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_0774 type I secretion outer membrane protein, TolC family.
  
 
 0.447
Swoo_3303
KEGG: sse:Ssed_3185 hypothetical protein.
  
     0.443
Swoo_0664
KEGG: sse:Ssed_3871 hypothetical protein.
       0.435
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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