STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0668PFAM: phosphoribulokinase/uridine kinase; KEGG: sse:Ssed_3867 phosphoribulokinase. (295 aa)    
Predicted Functional Partners:
Swoo_0879
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
  
 0.628
Swoo_0670
PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_3865 alpha/beta hydrolase fold.
     
 0.593
Swoo_0669
PFAM: protein of unknown function UPF0270; KEGG: sse:Ssed_3866 hypothetical protein.
       0.585
Swoo_1993
PFAM: phosphoribulokinase/uridine kinase; KEGG: pmc:P9515_14051 hypothetical protein.
  
     0.534
fbp
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: sse:Ssed_0813 inositol phosphatase/fructose-1,6-bisphosphatase.
 
  
 0.472
Swoo_0346
PFAM: ribulose-phosphate 3-epimerase; KEGG: sse:Ssed_4259 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 0.450
Swoo_1071
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: amt:Amet_2540 AAA ATPase, central domain protein.
 
    0.423
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.