STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0671KEGG: sse:Ssed_3864 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Swoo_0672
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sse:Ssed_3863 glucose-methanol-choline oxidoreductase.
 
     0.901
Swoo_3543
KEGG: sse:Ssed_3372 alpha/beta hydrolase fold.
  
     0.690
Swoo_0992
KEGG: sse:Ssed_0942 hypothetical protein.
  
     0.591
Swoo_2271
PFAM: CopG domain protein DNA-binding domain protein; KEGG: sse:Ssed_2336 CopG domain protein DNA-binding domain protein.
  
     0.575
Swoo_0066
PFAM: regulatory protein TetR; KEGG: sse:Ssed_0102 transcriptional regulator, TetR family.
  
     0.569
Swoo_3162
PFAM: protein of unknown function DUF1289; KEGG: sse:Ssed_1507 protein of unknown function DUF1289.
  
     0.530
Swoo_3298
KEGG: sse:Ssed_3177 hypothetical protein.
  
     0.483
Swoo_0645
PFAM: Curlin associated repeat protein; KEGG: sbn:Sbal195_0876 curlin associated repeat protein.
  
     0.482
Swoo_4152
PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type.
  
     0.481
priB
Single-strand binding protein/Primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.472
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.