STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0672PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sse:Ssed_3863 glucose-methanol-choline oxidoreductase. (532 aa)    
Predicted Functional Partners:
Swoo_0671
KEGG: sse:Ssed_3864 hypothetical protein.
 
     0.901
Swoo_0066
PFAM: regulatory protein TetR; KEGG: sse:Ssed_0102 transcriptional regulator, TetR family.
 
  
 0.579
Swoo_0967
PFAM: WD-40 repeat protein; KEGG: sse:Ssed_0917 WD-40 repeat protein.
    
  0.425
Swoo_4022
KEGG: sfr:Sfri_1847 hypothetical protein.
    
  0.425
Swoo_2271
PFAM: CopG domain protein DNA-binding domain protein; KEGG: sse:Ssed_2336 CopG domain protein DNA-binding domain protein.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.