STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0679PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_0827 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Swoo_0678
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3861 ABC transporter-related protein.
       0.659
proQ
ProQ activator of osmoprotectant transporter ProP; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
    0.613
Swoo_3643
KEGG: sse:Ssed_3441 hypothetical protein.
  
     0.576
Swoo_3356
PFAM: protein of unknown function DUF416; KEGG: sse:Ssed_1284 protein of unknown function DUF416.
  
     0.572
rraB
Protein of unknown function DUF1260; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
     0.569
Swoo_0677
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_3862 hypothetical protein.
       0.568
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.564
Swoo_1238
Anti sigma-E protein, RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish [...]
  
     0.553
Swoo_2297
PFAM: protein of unknown function DUF1315; KEGG: sse:Ssed_2313 protein of unknown function DUF1315.
  
     0.553
Swoo_2885
PFAM: protein of unknown function DUF412; KEGG: sse:Ssed_1706 protein of unknown function DUF412.
  
     0.550
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.