STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0686PFAM: NnrS family protein; KEGG: cps:CPS_0849 putative ATP synthase F0, A subunit. (431 aa)    
Predicted Functional Partners:
hmp
Globin; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
  
 0.904
Swoo_4471
PFAM: NosL family protein; KEGG: spl:Spea_0485 NosL family protein.
 
     0.641
Swoo_4447
KEGG: sse:Ssed_0491 copper ABC transporter, permease protein.
 
     0.640
Swoo_4449
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sse:Ssed_0500 periplasmic copper-binding.
 
  
 0.631
Swoo_4470
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: spl:Spea_0486 periplasmic copper-binding.
 
  
 0.624
Swoo_4468
KEGG: spl:Spea_0488 copper ABC transporter, permease protein.
 
     0.611
Swoo_4450
PFAM: NosL family protein; KEGG: spl:Spea_0509 NosL family protein.
 
     0.606
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
  
 0.599
Swoo_3517
PFAM: peptidase U32; KEGG: sse:Ssed_3351 peptidase U32.
 
     0.594
Swoo_0761
KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein.
 
  
 0.537
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.