Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0693TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_3975 GGDEF. (389 aa)    
Predicted Functional Partners:
Swoo_2555
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_2045 diguanylate cyclase/phosphodiesterase.
 
 
 0.809
Swoo_4422
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_0539 diguanylate cyclase/phosphodiesterase.
 
 
 0.807
Swoo_2349
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: vvy:VVA0712 hypothetical protein.
  
    0.788
Swoo_1051
Diguanylate phosphodiesterase; PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: slo:Shew_0919 diguanylate phosphodiesterase.
  
    0.786
Swoo_0618
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
   0.784
Swoo_2622
PFAM: EAL domain protein; KEGG: sse:Ssed_1968 diguanylate phosphodiesterase.
  
    0.784
Swoo_0821
PFAM: EAL domain protein; KEGG: shm:Shewmr7_0931 EAL domain protein.
  
     0.773
Swoo_0471
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4145 diguanylate cyclase/phosphodiesterase.
 
 
 0.748
Swoo_0050
KEGG: sse:Ssed_0046 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.536
Swoo_0829
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: aba:Acid345_4059 multi-sensor hybrid histidine kinase.
 
 
 0.525
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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