STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0696PFAM: putative esterase; KEGG: sde:Sde_2868 cysteine synthase A. (304 aa)    
Predicted Functional Partners:
Swoo_0978
PFAM: isochorismatase hydrolase; KEGG: sse:Ssed_0932 isochorismatase hydrolase.
 
    0.665
Swoo_0697
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: slo:Shew_0603 glutathione-dependent formaldehyde-activating, GFA.
       0.515
Swoo_0695
KEGG: cps:CPS_3605 hypothetical protein.
       0.513
Swoo_4845
KEGG: sse:Ssed_4452 hypothetical protein.
  
     0.512
Swoo_4500
PFAM: beta-lactamase; KEGG: pat:Patl_3770 beta-lactamase.
  
     0.478
Swoo_2874
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sse:Ssed_1717 C4-dicarboxylate transporter/malic acid transport protein.
   
    0.453
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.