Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0701anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: cps:CPS_2817 putative regulatory protein. (359 aa)    
Predicted Functional Partners:
Swoo_0700
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cps:CPS_2816 putative RNA polymerase sigma-70 factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.969
Swoo_3834
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein.
  
 
 
0.918
Swoo_0946
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2875 outer membrane protein.
 
 
 0.915
Swoo_3835
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.874
Swoo_0702
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_2818 TonB-dependent receptor.
 
    0.738
Swoo_3787
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_0713 TonB-dependent receptor.
  
 
 0.677
Swoo_4039
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4358 TonB-dependent receptor.
 
  
 0.615
Swoo_3836
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2390 argininosuccinate synthase.
  
    0.588
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
 
  
 0.580
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
 
  
 0.577
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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