Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Swoo_0710KEGG: sse:Ssed_3849 ABC transporter for cysteine ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase. (607 aa)    
Predicted Functional Partners:
Swoo_0711
KEGG: sse:Ssed_3848 ABC transporter for cysteine ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
0.999
Swoo_1566
KEGG: sse:Ssed_3117 alkaline phosphatase; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
 
  
 0.973
Swoo_1565
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sse:Ssed_3118 cytochrome bd ubiquinol oxidase, subunit I.
 
  
 0.964
Swoo_1567
TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: slo:Shew_1304 cyd operon protein YbgT.
 
  
 0.755
gshA
TIGRFAM: glutamate--cysteine ligase; KEGG: sse:Ssed_1329 glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
   
 0.433
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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