STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0715PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: sse:Ssed_3845 SH3 domain protein. (191 aa)    
Predicted Functional Partners:
Swoo_1238
Anti sigma-E protein, RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish [...]
  
  
 0.658
Swoo_0717
PFAM: protein of unknown function DUF47; KEGG: sse:Ssed_3843 protein of unknown function DUF47.
 
     0.554
Swoo_0481
PFAM: protein of unknown function DUF513 hemX; KEGG: sse:Ssed_4135 protein of unknown function DUF513, HemX.
  
     0.548
Swoo_4193
PFAM: protein of unknown function DUF1249; KEGG: sse:Ssed_0776 protein of unknown function DUF1249.
  
    0.529
Swoo_0716
PFAM: phosphate transporter; KEGG: sse:Ssed_3844 phosphate transporter.
       0.513
Swoo_0714
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
       0.503
Swoo_2732
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: spl:Spea_2565 Tol-Pal system TolA.
  
     0.495
Swoo_4139
KEGG: sse:Ssed_3977 hypothetical protein.
  
     0.451
Swoo_2075
PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein.
  
     0.449
Swoo_0480
PFAM: HemY domain protein; KEGG: sse:Ssed_4136 HemY domain protein.
  
     0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.