Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0716PFAM: phosphate transporter; KEGG: sse:Ssed_3844 phosphate transporter. (422 aa)    
Predicted Functional Partners:
Swoo_0717
PFAM: protein of unknown function DUF47; KEGG: sse:Ssed_3843 protein of unknown function DUF47.
 
  
 0.991
Swoo_3167
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1502 phosphate ABC transporter, inner membrane subunit PstA.
     
 0.710
pstB
Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
 0.624
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
     
 0.606
Swoo_0715
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: sse:Ssed_3845 SH3 domain protein.
       0.572
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.562
Swoo_0515
PFAM: Ppx/GppA phosphatase; KEGG: sse:Ssed_4108 guanosine-5'-triphosphate,3'-diphosphate diphosphatase.
     
 0.527
Swoo_0718
PFAM: adenylate cyclase; KEGG: sse:Ssed_3842 adenylate cyclase.
       0.522
Swoo_3165
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
     
 0.521
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: spl:Spea_0757 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
    0.504
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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