STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0716PFAM: phosphate transporter; KEGG: sse:Ssed_3844 phosphate transporter. (422 aa)    
Predicted Functional Partners:
Swoo_0717
PFAM: protein of unknown function DUF47; KEGG: sse:Ssed_3843 protein of unknown function DUF47.
 
  
 0.990
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
     
 0.622
Swoo_4387
PFAM: regulatory protein ArsR; KEGG: sse:Ssed_0574 transcriptional regulator, ArsR family.
      
 0.621
Swoo_3167
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1502 phosphate ABC transporter, inner membrane subunit PstA.
     
 0.575
Swoo_0715
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: sse:Ssed_3845 SH3 domain protein.
       0.513
hisB
KEGG: spl:Spea_2459 histidinol-phosphatase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: imidazoleglycerol-phosphate dehydratase; In the N-terminal section; belongs to the histidinol- phosphatase family.
     
 0.496
Swoo_0718
PFAM: adenylate cyclase; KEGG: sse:Ssed_3842 adenylate cyclase.
       0.456
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
    0.452
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: spl:Spea_0757 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
    0.450
Swoo_3165
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
     
 0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.