Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0720KEGG: sse:Ssed_3840 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Swoo_0722
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sse:Ssed_3838 phage shock protein A, PspA.
 
     0.893
Swoo_0723
KEGG: sse:Ssed_3837 hypothetical protein.
 
     0.880
Swoo_0726
KEGG: sse:Ssed_3834 hypothetical protein.
 
     0.821
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.819
Swoo_0725
PFAM: protein of unknown function DUF350; KEGG: sse:Ssed_3835 protein of unknown function DUF350.
 
     0.783
Swoo_2107
KEGG: sse:Ssed_2526 hypothetical protein.
  
     0.714
Swoo_0721
KEGG: sse:Ssed_3839 hypothetical protein.
       0.685
Swoo_0719
PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sse:Ssed_3841 ion transport 2 domain protein.
       0.628
Swoo_1421
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: sse:Ssed_3204 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.554
Swoo_3647
PFAM: VanZ family protein; KEGG: sse:Ssed_3444 VanZ family protein.
  
     0.532
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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