STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speESpermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (576 aa)    
Predicted Functional Partners:
mtnN
Adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
     
 0.903
Swoo_4916
PFAM: purine or other phosphorylase family 1; KEGG: spl:Spea_3850 purine or other phosphorylase family 1.
     
 0.903
Swoo_2009
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_1548 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
     
  0.900
Swoo_2058
PFAM: S-adenosylmethionine decarboxylase; KEGG: sse:Ssed_2608 adenosylmethionine decarboxylase.
     
  0.900
Swoo_2059
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family.
     
  0.900
Swoo_3441
PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1375 GCN5-related N-acetyltransferase.
     
  0.900
Swoo_0726
KEGG: sse:Ssed_3834 hypothetical protein.
 
     0.896
Swoo_0723
KEGG: sse:Ssed_3837 hypothetical protein.
 
     0.883
Swoo_0725
PFAM: protein of unknown function DUF350; KEGG: sse:Ssed_3835 protein of unknown function DUF350.
 
     0.852
Swoo_0722
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sse:Ssed_3838 phage shock protein A, PspA.
 
     0.830
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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