STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0733KEGG: sse:Ssed_3828 hypothetical protein. (747 aa)    
Predicted Functional Partners:
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.704
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.664
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.599
Swoo_0566
PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V.
  
     0.585
Swoo_0427
PFAM: peptidase domain protein; KEGG: pha:PSHAa2649 serine protease precursor.
  
     0.576
Swoo_1073
KEGG: cps:CPS_3074 cytochrome P460.
  
     0.562
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
     0.524
Swoo_3449
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_3300 microbial collagenase.
  
     0.504
Swoo_3959
KEGG: cps:CPS_1818 hypothetical protein.
  
     0.490
Swoo_3259
KEGG: cps:CPS_2688 hypothetical protein.
  
     0.473
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.