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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0736PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_0632 OmpA/MotB domain protein. (497 aa)    
Predicted Functional Partners:
Swoo_0737
KEGG: slo:Shew_3624 hypothetical protein.
       0.773
Swoo_0473
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_4143 OmpA/MotB domain protein.
  
     0.685
Swoo_2123
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_2493 OmpA/MotB domain protein.
  
     0.590
Swoo_2738
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1851 OmpA/MotB domain protein.
  
     0.550
Swoo_0738
KEGG: slo:Shew_0633 hypothetical protein.
       0.543
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.500
Swoo_3474
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_3325 OmpA/MotB domain protein.
  
 
 
 0.495
Swoo_2124
LPXTG-motif cell wall anchor domain protein; KEGG: sse:Ssed_2492 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa.
  
    0.469
Swoo_3272
PFAM: outer membrane chaperone Skp (OmpH); KEGG: sse:Ssed_3152 outer membrane chaperone Skp (OmpH); Belongs to the skp family.
  
 
 0.453
Swoo_4499
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: pat:Patl_3769 transcriptional regulator, CadC.
 
 
 0.445
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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