STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0747PFAM: type II secretion system protein; KEGG: slo:Shew_0643 type II secretion system protein. (283 aa)    
Predicted Functional Partners:
Swoo_0746
PFAM: type II secretion system protein; KEGG: slo:Shew_0642 type II secretion system protein.
 
  
 0.985
Swoo_0750
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: slo:Shew_0646 SAF domain protein.
 
  
 0.985
Swoo_0748
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: slo:Shew_0644 FHA domain containing protein.
 
  
 0.982
Swoo_0749
PFAM: type II and III secretion system protein; KEGG: slo:Shew_0645 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.967
Swoo_0754
KEGG: slo:Shew_0650 hypothetical protein.
 
  
 0.957
Swoo_0745
PFAM: protein of unknown function DUF192; KEGG: slo:Shew_0641 protein of unknown function DUF192.
 
     0.949
Swoo_0610
PFAM: type II secretion system protein; KEGG: ppr:PBPRA2501 hypothetical Flp pilus assembly protein TadC.
 
  
 0.939
Swoo_0608
PFAM: type II secretion system protein E; KEGG: ppr:PBPRA2499 putative Flp pilus assembly protein.
 
  
 0.910
Swoo_0743
KEGG: slo:Shew_0639 hypothetical protein.
  
  
 0.882
Swoo_0605
PFAM: type II and III secretion system protein; transport-associated; KEGG: ppr:PBPRA2496 hypothetical Flp pilus assembly protein; Belongs to the bacterial secretin family.
 
  
 0.848
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.