STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0754KEGG: slo:Shew_0650 hypothetical protein. (465 aa)    
Predicted Functional Partners:
Swoo_0750
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: slo:Shew_0646 SAF domain protein.
 
  
 0.962
Swoo_0747
PFAM: type II secretion system protein; KEGG: slo:Shew_0643 type II secretion system protein.
 
  
 0.956
Swoo_0746
PFAM: type II secretion system protein; KEGG: slo:Shew_0642 type II secretion system protein.
 
    0.950
Swoo_0748
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: slo:Shew_0644 FHA domain containing protein.
 
  
 0.939
Swoo_0749
PFAM: type II and III secretion system protein; KEGG: slo:Shew_0645 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.927
Swoo_0745
PFAM: protein of unknown function DUF192; KEGG: slo:Shew_0641 protein of unknown function DUF192.
 
     0.918
Swoo_0755
KEGG: slo:Shew_0651 hypothetical protein.
 
     0.898
Swoo_0756
KEGG: slo:Shew_0652 hypothetical protein.
 
     0.869
Swoo_0744
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0640 TPR repeat-containing protein.
 
     0.821
Swoo_0752
KEGG: slo:Shew_0648 hypothetical protein.
       0.800
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.