STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0761KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein. (762 aa)    
Predicted Functional Partners:
Swoo_1417
PFAM: multicopper oxidase type 1; multicopper oxidase type 3; KEGG: net:Neut_1403 multicopper oxidase, type 3.
 
  
 0.969
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
  
 0.947
Swoo_0178
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.750
Swoo_2259
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
  
 
 0.739
Swoo_4447
KEGG: sse:Ssed_0491 copper ABC transporter, permease protein.
  
  
 0.685
Swoo_4468
KEGG: spl:Spea_0488 copper ABC transporter, permease protein.
  
  
 0.680
Swoo_4470
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: spl:Spea_0486 periplasmic copper-binding.
  
    0.677
Swoo_4449
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sse:Ssed_0500 periplasmic copper-binding.
  
    0.675
Swoo_0492
Protein of unknown function DUF542 ScdA domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
  
 0.661
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
  
 
 0.660
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.