Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0763KEGG: sse:Ssed_3820 flagellar biosynthesis protein, putative. (394 aa)    
Predicted Functional Partners:
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.709
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
 
     0.700
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
  
 0.664
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.652
Swoo_1533
PFAM: extracellular solute-binding protein family 1; KEGG: sse:Ssed_1420 extracellular solute-binding protein, family 1.
  
     0.647
Swoo_3023
KEGG: slo:Shew_2422 hypothetical protein.
  
     0.605
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.589
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.581
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.579
Swoo_1599
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.575
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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