STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0766KEGG: sse:Ssed_2789 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Swoo_2369
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: mxa:MXAN_2316 EF hand domain protein.
  
     0.441
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.439
Swoo_1675
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.417
Swoo_1907
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
     0.415
Swoo_3768
Protease-associated PA domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; peptidase domain protein; KEGG: shm:Shewmr7_0825 protease-associated PA domain protein; Belongs to the peptidase S8 family.
  
     0.413
Swoo_0767
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_1437 putative transcriptional regulator, MerR family.
       0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.