STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0779KEGG: sse:Ssed_3804 hypothetical protein. (576 aa)    
Predicted Functional Partners:
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.716
Swoo_4489
KEGG: sse:Ssed_0473 hypothetical protein.
  
     0.691
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.655
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
  
     0.639
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
  
     0.634
Swoo_3436
PFAM: protein of unknown function DUF437; KEGG: vpa:VPA1414 hypothetical protein; Belongs to the UPF0267 family.
  
     0.612
Swoo_2222
KEGG: sse:Ssed_2376 transposase and inactivated derivative.
  
     0.608
Swoo_0780
KEGG: sse:Ssed_3803 hypothetical protein.
       0.588
Swoo_0471
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4145 diguanylate cyclase/phosphodiesterase.
  
     0.516
Swoo_0648
Microbial collagenase; PFAM: peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: son:SO_0639 collagenase family.
  
     0.509
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.