Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0789PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_3795 major facilitator superfamily MFS_1. (395 aa)    
Predicted Functional Partners:
Swoo_1284
PFAM: protein of unknown function DUF328; KEGG: sse:Ssed_1188 protein of unknown function DUF328; Belongs to the UPF0246 family.
  
    0.666
Swoo_0790
KEGG: sse:Ssed_3793 hypothetical protein.
 
     0.550
Swoo_0788
KEGG: sse:Ssed_3796 hypothetical protein.
       0.549
Swoo_0108
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: spl:Spea_4077 peptidase M24.
  
     0.431
Swoo_0792
PFAM: protein of unknown function DUF1111; KEGG: sse:Ssed_3791 protein of unknown function DUF1111.
 
     0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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