Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0790KEGG: sse:Ssed_3793 hypothetical protein. (461 aa)    
Predicted Functional Partners:
Swoo_0791
KEGG: sse:Ssed_3792 putative lipoprotein.
 
    0.881
Swoo_0775
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_3808 hypothetical protein.
  
     0.670
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.632
Swoo_3214
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amr:AM1_6231 glyoxalase family protein.
  
     0.604
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.594
Swoo_0792
PFAM: protein of unknown function DUF1111; KEGG: sse:Ssed_3791 protein of unknown function DUF1111.
 
    0.587
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
  
     0.569
Swoo_0789
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_3795 major facilitator superfamily MFS_1.
 
     0.550
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.550
Swoo_1052
PFAM: major facilitator superfamily MFS_1; KEGG: spl:Spea_0891 major facilitator superfamily MFS_1.
  
     0.532
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.